Detailed information of ARNT

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Dataset summary

TF Name: ARNT Species: Homo sapiens
Cell-type/Tissue: T47D Condition/Source: haegin2
JASPAR ID: MA0004.1 Collections: Permissive
References: GEO GSE59935

External links

Models for profile: MA0004.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 135317 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 135317 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format





Download 135317 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser





Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
BEM MACS MA0004.1 111 31114 98.4634 -1.3315182266521
PWM MACS MA0004.1 117 35489 87.2 -3.4995000244929
DNAshaped MACS MA0004.1 125 34172 0.99261 -1.9720034452234
DNAshaped MACS MA0004.1 125 34698 0.99123 -2.3154339354486
DNAshaped MACS MA0004.1 137 36472 0.98777 -2.0711466952628

4 datasets found for the same TF (ARNT) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
ARNT K562 Permissive Homo sapiens ENCSR155KHM MA0004.1
ARNT MCF7 Permissive Homo sapiens GSE41820 MA0004.1
ARNT 786O hif1a Permissive Homo sapiens GSE67237 MA0004.1
ARNT 786O hif2a Permissive Homo sapiens GSE67237 MA0004.1