Detailed information of ARNT

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Dataset summary

TF Name: ARNT Species: Homo sapiens
Cell-type/Tissue: MCF7 Condition/Source:
JASPAR ID: MA0004.1 Collections: Permissive
References: GEO GSE41820

External links

Models for profile: MA0004.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 369352 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 369352 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format





Download 369352 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser





Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
BEM MACS MA0004.1 15 5209 97.8296 1.0
PWM MACS MA0004.1 1 813 80.2 1.0
DNAshaped MACS MA0004.1 1 749 0.98863 1.0
DNAshaped MACS MA0004.1 1 660 0.99485 1.0
DNAshaped MACS MA0004.1 1 733 0.97434 1.0

4 datasets found for the same TF (ARNT) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
ARNT K562 Permissive Homo sapiens ENCSR155KHM MA0004.1
ARNT T47D haegin2 Permissive Homo sapiens GSE59935 MA0004.1
ARNT 786O hif1a Permissive Homo sapiens GSE67237 MA0004.1
ARNT 786O hif2a Permissive Homo sapiens GSE67237 MA0004.1