Detailed information of GATA2

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Dataset summary

TF Name: GATA2 Species: Homo sapiens
Cell-type/Tissue: LNCAP Condition/Source: shgata2 r1881
JASPAR ID: MA0036.3 Collections: Permissive
References: GEO GSE69043

External links

Models for profile: MA0036.3

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 134967 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 134967 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format





Download 134967 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser





Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 134967 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
BEM MACS MA0036.3 146 48165 99.9151 -9.2089880775429
PWM MACS MA0036.3 164 76013 84.8 -36.590538399892
DNAshaped MACS MA0036.3 160 72869 0.98386 -34.621505076349
DNAshaped MACS MA0036.3 160 72881 0.98258 -34.646251297107
DNAshaped MACS MA0036.3 138 54279 0.94695 -17.694531274015
TFFM MACS MA0036.3 138 54469 0.81685 -16.902590427776

19 datasets found for the same TF (GATA2) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
GATA2 K562 Permissive Homo sapiens ENCSR000BKM MA0036.3
GATA2 K562 Permissive Homo sapiens ENCSR000DKA MA0036.3
GATA2 ENDOTHELIAL umbilical vein Permissive Homo sapiens ENCSR000EVW MA0036.3
GATA2 K562 Permissive Homo sapiens ENCSR000EWG MA0036.3
GATA2 SHSY5Y Permissive Homo sapiens ENCSR000EYB MA0036.3
GATA2 HL60 Permissive Homo sapiens ERP008568 MA0036.3
GATA2 CD34 prog bmp Permissive Homo sapiens GSE29194 MA0036.3
GATA2 LNCAP Permissive Homo sapiens GSE38391 MA0036.3
GATA2 ME1 Permissive Homo sapiens GSE46044 MA0036.3
GATA2 LNCAP Permissive Homo sapiens GSE52725 MA0036.3
GATA2 TSU1621MT Permissive Homo sapiens GSE60477 MA0036.3
GATA2 CD34 acy957 Permissive Homo sapiens GSE60792 MA0036.3
GATA2 CD34 dmso Permissive Homo sapiens GSE60792 MA0036.3
GATA2 LNCAP csfcs Permissive Homo sapiens GSE69043 MA0036.3
GATA2 LNCAP etoh Permissive Homo sapiens GSE69043 MA0036.3
GATA2 LNCAP fbs Permissive Homo sapiens GSE69043 MA0036.3
GATA2 LNCAP r1881 Permissive Homo sapiens GSE69043 MA0036.3
GATA2 LNCAP shgata2 etoh Permissive Homo sapiens GSE69043 MA0036.3
GATA2 TF1 Permissive Homo sapiens GSE73207 MA0036.3