Detailed information of GABPA

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Dataset summary

TF Name: GABPA Species: Homo sapiens
Cell-type/Tissue: VCAP Condition/Source: r1881
JASPAR ID: MA0062.2 Collections: Permissive
References: GEO GSE49091

External links

Models for profile: MA0062.2

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 56821 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 56821 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format





Download 56821 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser





Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 56821 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
BEM MACS MA0062.2 126 15081 99.9099 -2.5194151748153
PWM MACS MA0062.2 154 23336 88.5 -14.545551192195
DNAshaped MACS MA0062.2 154 22606 0.99522 -13.78643542755
DNAshaped MACS MA0062.2 154 22457 0.99399 -13.435654277685
DNAshaped MACS MA0062.2 140 16284 0.93747 -3.2944931012466
TFFM MACS MA0062.2 140 14595 0.60947 -0.5397941477498

20 datasets found for the same TF (GABPA) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
GABPA GM12878 Permissive Homo sapiens ENCSR000BGC MA0062.2
GABPA HELA s3 Permissive Homo sapiens ENCSR000BHS MA0062.2
GABPA ESC h1 Permissive Homo sapiens ENCSR000BIW MA0062.2
GABPA HEPG2 Permissive Homo sapiens ENCSR000BJK MA0062.2
GABPA K562 Permissive Homo sapiens ENCSR000BLO MA0062.2
GABPA A549 Permissive Homo sapiens ENCSR000BPY MA0062.2
GABPA SKNSH Permissive Homo sapiens ENCSR000BTG MA0062.2
GABPA HL60 Permissive Homo sapiens ENCSR000BTK MA0062.2
GABPA MCF7 Permissive Homo sapiens ENCSR000BUK MA0062.2
GABPA MCF7 Permissive Homo sapiens ENCSR038RXU MA0062.2
GABPA K562 Permissive Homo sapiens ENCSR290MUH MA0062.2
GABPA GM12878 Permissive Homo sapiens ENCSR331HPA MA0062.2
GABPA RWPE1 Permissive Homo sapiens GSE29808 MA0062.2
GABPA HELA Permissive Homo sapiens GSE31417 MA0062.2
GABPA JURKAT Permissive Homo sapiens GSE49091 MA0062.2
GABPA VCAP Permissive Homo sapiens GSE49091 MA0062.2
GABPA VCAP etoh Permissive Homo sapiens GSE49091 MA0062.2
GABPA DU145 Permissive Homo sapiens GSE59021 MA0062.2
GABPA HEPG2 Permissive Homo sapiens GSE72082 MA0062.2
GABPA MCF7 Permissive Homo sapiens GSE72082 MA0062.2