Detailed information of GABPA

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Dataset summary

TF Name: GABPA Species: Homo sapiens
Cell-type/Tissue: VCAP Condition/Source: etoh
JASPAR ID: MA0062.2 Collections: Permissive
References: GEO GSE49091

External links

Models for profile: MA0062.2

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 53054 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 53054 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format





Download 53054 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser





Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 53054 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
BEM MACS MA0062.2 142 15413 99.9173 -2.8226114062362
PWM MACS MA0062.2 146 22614 87.9 -18.415814459119
DNAshaped MACS MA0062.2 146 22030 0.99582 -17.963043908331
DNAshaped MACS MA0062.2 146 21568 0.99464 -16.690936292987
DNAshaped MACS MA0062.2 142 16309 0.92673 -5.113899570831
TFFM MACS MA0062.2 142 13703 0.68644 -0.4856758720475

20 datasets found for the same TF (GABPA) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
GABPA GM12878 Permissive Homo sapiens ENCSR000BGC MA0062.2
GABPA HELA s3 Permissive Homo sapiens ENCSR000BHS MA0062.2
GABPA ESC h1 Permissive Homo sapiens ENCSR000BIW MA0062.2
GABPA HEPG2 Permissive Homo sapiens ENCSR000BJK MA0062.2
GABPA K562 Permissive Homo sapiens ENCSR000BLO MA0062.2
GABPA A549 Permissive Homo sapiens ENCSR000BPY MA0062.2
GABPA SKNSH Permissive Homo sapiens ENCSR000BTG MA0062.2
GABPA HL60 Permissive Homo sapiens ENCSR000BTK MA0062.2
GABPA MCF7 Permissive Homo sapiens ENCSR000BUK MA0062.2
GABPA MCF7 Permissive Homo sapiens ENCSR038RXU MA0062.2
GABPA K562 Permissive Homo sapiens ENCSR290MUH MA0062.2
GABPA GM12878 Permissive Homo sapiens ENCSR331HPA MA0062.2
GABPA RWPE1 Permissive Homo sapiens GSE29808 MA0062.2
GABPA HELA Permissive Homo sapiens GSE31417 MA0062.2
GABPA JURKAT Permissive Homo sapiens GSE49091 MA0062.2
GABPA VCAP Permissive Homo sapiens GSE49091 MA0062.2
GABPA VCAP r1881 Permissive Homo sapiens GSE49091 MA0062.2
GABPA DU145 Permissive Homo sapiens GSE59021 MA0062.2
GABPA HEPG2 Permissive Homo sapiens GSE72082 MA0062.2
GABPA MCF7 Permissive Homo sapiens GSE72082 MA0062.2