Detailed information of RELA

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Dataset summary

TF Name: RELA Species: Homo sapiens
Cell-type/Tissue: LNCAP Condition/Source: sictr tnfa
JASPAR ID: MA0107.1 Collections: Permissive
References: GEO GSE83860

External links

Models for profile: MA0107.1

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 29272 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 29272 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format





Download 29272 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser





Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 29272 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
BEM MACS MA0107.1 125 8224 99.7554 -4.1753670422431
PWM MACS MA0107.1 123 8680 80.6 -6.1422945665692
DNAshaped MACS MA0107.1 123 8722 0.64146 -6.6880330349397
DNAshaped MACS MA0107.1 123 7809 0.91737 -3.491726456323
DNAshaped MACS MA0107.1 75 3862 0.85407 -7.6667863881916
TFFM MACS MA0107.1 75 3890 0.6628 -5.0339828462649

47 datasets found for the same TF (RELA) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
RELA GM10847 Permissive Homo sapiens ENCSR000DYM MA0107.1
RELA GM12878 Permissive Homo sapiens ENCSR000EAG MA0107.1
RELA GM12891 Permissive Homo sapiens ENCSR000EAI MA0107.1
RELA GM12892 Permissive Homo sapiens ENCSR000EAN MA0107.1
RELA GM15510 Permissive Homo sapiens ENCSR000EAQ MA0107.1
RELA GM18505 Permissive Homo sapiens ENCSR000EAW MA0107.1
RELA GM18526 Permissive Homo sapiens ENCSR000EBA MA0107.1
RELA GM18951 Permissive Homo sapiens ENCSR000EBD MA0107.1
RELA GM19099 Permissive Homo sapiens ENCSR000EBI MA0107.1
RELA GM19193 Permissive Homo sapiens ENCSR000EBM MA0107.1
RELA GM12878 Permissive Homo sapiens ENCSR664POU MA0107.1
RELA K562 Permissive Homo sapiens ENCSR772EEN MA0107.1
RELA HELAB2 dmso Permissive Homo sapiens GSE24518 MA0107.1
RELA HELAB2 grkd dmso Permissive Homo sapiens GSE24518 MA0107.1
RELA HELAB2 grkd ta tnfa Permissive Homo sapiens GSE24518 MA0107.1
RELA HELAB2 p65kd dmso Permissive Homo sapiens GSE24518 MA0107.1
RELA HELAB2 p65kd ta tnfa Permissive Homo sapiens GSE24518 MA0107.1
RELA HELAB2 ta Permissive Homo sapiens GSE24518 MA0107.1
RELA HELAB2 ta tnfa Permissive Homo sapiens GSE24518 MA0107.1
RELA HELAB2 tnfa Permissive Homo sapiens GSE24518 MA0107.1
RELA HUVEC tnf 0m Permissive Homo sapiens GSE34500 MA0107.1
RELA HUVEC tnf 30m Permissive Homo sapiens GSE34500 MA0107.1
RELA HUVEC tnf Permissive Homo sapiens GSE43070 MA0107.1
RELA IMR90 Permissive Homo sapiens GSE43070 MA0107.1
RELA IMR90 tnf Permissive Homo sapiens GSE43070 MA0107.1
RELA AC16 Permissive Homo sapiens GSE51169 MA0107.1
RELA AC16 tnfa Permissive Homo sapiens GSE51169 MA0107.1
RELA KB il Permissive Homo sapiens GSE52469 MA0107.1
RELA HUVEC Permissive Homo sapiens GSE53998 MA0107.1
RELA HUVEC tnf jq1 Permissive Homo sapiens GSE53998 MA0107.1
RELA MCF7 Permissive Homo sapiens GSE59530 MA0107.1
RELA MCF7 e2 Permissive Homo sapiens GSE59530 MA0107.1
RELA MCF7 e2 tnf Permissive Homo sapiens GSE59530 MA0107.1
RELA MCF7 tnf Permissive Homo sapiens GSE59530 MA0107.1
RELA CD4 th1 bay Permissive Homo sapiens GSE62482 MA0107.1
RELA CD4 th1 dmso Permissive Homo sapiens GSE62482 MA0107.1
RELA L1236 Permissive Homo sapiens GSE63736 MA0107.1
RELA KB 5z il Permissive Homo sapiens GSE64223 MA0107.1
RELA KB il Permissive Homo sapiens GSE64223
RELA KB pha il Permissive Homo sapiens GSE64223
RELA SGBS Permissive Homo sapiens GSE64233 MA0107.1
RELA SGBS tnf Permissive Homo sapiens GSE64233 MA0107.1
RELA HDF dmso Permissive Homo sapiens GSE77225 MA0107.1
RELA HDF nutlin Permissive Homo sapiens GSE77225 MA0107.1
RELA LNCAP dht tnfa Permissive Homo sapiens GSE83860 MA0107.1
RELA LNCAP sifoxa1 tnfa Permissive Homo sapiens GSE83860 MA0107.1
RELA LNCAP tnfa Permissive Homo sapiens GSE83860 MA0107.1