Detailed information of FOXA1

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Dataset summary

TF Name: FOXA1 Species: Homo sapiens
Cell-type/Tissue: VCAP Condition/Source: shctr r1881
JASPAR ID: MA0148.3 Collections: Permissive
References: GEO GSE56086

External links

Models for profile: MA0148.3

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 198940 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 198940 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Download TFBSs (hg38)

Download TFBSs in BED and FASTA format





Download 198940 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser





Download TFBSs (hg38)

Download TFBSs in BED and FASTA format

Download 198940 peaks in BED format

Download trained model

Download trained prediction models

Visualize TFBSs in UCSC

Send TFBSs BED file to UCSC genome browser

Summary plots

Statistical details

Model Peak caller Model ID Enrichment Zone TFBSs Score threshold Centrality p-value (log10)
BEM MACS MA0148.3 104 44344 99.9711 -1.4412135121799
PWM MACS MA0148.3 170 97601 85.4 -22.517628002798
DNAshaped MACS MA0148.3 170 94041 0.98441 -20.59072363204
DNAshaped MACS MA0148.3 170 93165 0.986 -19.933488632215
DNAshaped MACS MA0148.3 154 73647 0.95004 -9.8648586617373
TFFM MACS MA0148.3 154 70661 0.71799 -7.6272649021274

78 datasets found for the same TF (FOXA1) in other cell-types/tissues

TF Name Cell-line Condition/Source Collections Species Identifiers JASPAR ID
FOXA1 ISHIKAWA Permissive Homo sapiens ENCSR000BKW MA0148.3
FOXA1 T47D Permissive Homo sapiens ENCSR000BKY MA0148.3
FOXA1 HEPG2 Permissive Homo sapiens ENCSR000BLE MA0148.3
FOXA1 HEPG2 Permissive Homo sapiens ENCSR000BMO MA0148.3
FOXA1 A549 Permissive Homo sapiens ENCSR000BPX MA0148.3
FOXA1 A549 Permissive Homo sapiens ENCSR000BRD MA0148.3
FOXA1 MCF7 Permissive Homo sapiens ERP000380 MA0148.3
FOXA1 MCF7 e2 tam Permissive Homo sapiens ERP000380 MA0148.3
FOXA1 MCF7 tamr_e2_tam Permissive Homo sapiens ERP000380 MA0148.3
FOXA1 T47D e2 tam Permissive Homo sapiens ERP000380 MA0148.3
FOXA1 ZR751 e2 tam Permissive Homo sapiens ERP000380 MA0148.3
FOXA1 LNCAP Permissive Homo sapiens ERP001226 MA0148.3
FOXA1 MCF7 Permissive Homo sapiens ERP001226 MA0148.3
FOXA1 MDAMB453 Permissive Homo sapiens ERP001226 MA0148.3
FOXA1 LIVER Permissive Homo sapiens ERP002306 MA0148.3
FOXA1 LNCAP Permissive Homo sapiens ERP003828 MA0148.3
FOXA1 MCF7 Permissive Homo sapiens ERP003828 MA0148.3
FOXA1 ZR751 Permissive Homo sapiens ERP003828 MA0148.3
FOXA1 MCF7 e2 Permissive Homo sapiens GSE23852 MA0148.3
FOXA1 MCF7 etoh Permissive Homo sapiens GSE23852 MA0148.3
FOXA1 LNCAP dht Permissive Homo sapiens GSE28264 MA0148.3
FOXA1 LNCAP etoh Permissive Homo sapiens GSE28264 MA0148.3
FOXA1 LNCAP 1f5 Permissive Homo sapiens GSE30623 MA0148.3
FOXA1 LNCAP 1f5 sifoxa1 Permissive Homo sapiens GSE30623 MA0148.3
FOXA1 LNCAP shctr r1881 Permissive Homo sapiens GSE37345 MA0148.3
FOXA1 LNCAP shfoxa1 r1881 Permissive Homo sapiens GSE37345 MA0148.3
FOXA1 HUH7 async Permissive Homo sapiens GSE39241 MA0148.3
FOXA1 HUH7 mito Permissive Homo sapiens GSE39241 MA0148.3
FOXA1 NCIH3122 Permissive Homo sapiens GSE39998 MA0148.3
FOXA1 C42B Permissive Homo sapiens GSE40050 MA0148.3
FOXA1 C42B dht Permissive Homo sapiens GSE40050 MA0148.3
FOXA1 MCF7 sictr Permissive Homo sapiens GSE40129 MA0148.3
FOXA1 MCF7 sigata Permissive Homo sapiens GSE40129 MA0148.3
FOXA1 MDAMB453 dht Permissive Homo sapiens GSE45201 MA0148.3
FOXA1 DU145 Permissive Homo sapiens GSE47987 MA0148.3
FOXA1 DU145 foxa1 arc562s Permissive Homo sapiens GSE47987 MA0148.3
FOXA1 DU145 foxa1 arq6540x Permissive Homo sapiens GSE47987 MA0148.3
FOXA1 DU145 foxa1 high Permissive Homo sapiens GSE47987 MA0148.3
FOXA1 LNCAP Permissive Homo sapiens GSE52725 MA0148.3
FOXA1 VCAP etoh Permissive Homo sapiens GSE56086 MA0148.3
FOXA1 VCAP r1881 Permissive Homo sapiens GSE56086 MA0148.3
FOXA1 VCAP shpias1 r1881 Permissive Homo sapiens GSE56086 MA0148.3
FOXA1 LNCAP Permissive Homo sapiens GSE56288 MA0148.3
FOXA1 LNCAP dht24h Permissive Homo sapiens GSE58428 MA0148.3
FOXA1 LNCAP etoh24h Permissive Homo sapiens GSE58428 MA0148.3
FOXA1 VCAP dht24h Permissive Homo sapiens GSE58428 MA0148.3
FOXA1 VCAP etoh24h Permissive Homo sapiens GSE58428 MA0148.3
FOXA1 MCF7 Permissive Homo sapiens GSE59530 MA0148.3
FOXA1 MCF7 e2 Permissive Homo sapiens GSE59530 MA0148.3
FOXA1 MCF7 e2 tnf Permissive Homo sapiens GSE59530 MA0148.3
FOXA1 MCF7 tnf Permissive Homo sapiens GSE59530 MA0148.3
FOXA1 MCF7 Permissive Homo sapiens GSE60270 MA0148.3
FOXA1 MCF7 e2 Permissive Homo sapiens GSE60270 MA0148.3
FOXA1 LNCAP abl Permissive Homo sapiens GSE63034 MA0148.3
FOXA1 LNCAP abl shcreb1 Permissive Homo sapiens GSE63034 MA0148.3
FOXA1 LNCAP abl shctr Permissive Homo sapiens GSE63034 MA0148.3
FOXA1 PDAC koklf5 Permissive Homo sapiens GSE64557 MA0148.3
FOXA1 PDAC shctr Permissive Homo sapiens GSE64557 MA0148.3
FOXA1 LNCAP Permissive Homo sapiens GSE64656 MA0148.3
FOXA1 LNCAP etoh Permissive Homo sapiens GSE69043 MA0148.3
FOXA1 LNCAP phfrpmifcs Permissive Homo sapiens GSE69043 MA0148.3
FOXA1 LNCAP r1881 Permissive Homo sapiens GSE69043 MA0148.3
FOXA1 LNCAP shgata2 etoh Permissive Homo sapiens GSE69043 MA0148.3
FOXA1 LNCAP shgata2 r1881 Permissive Homo sapiens GSE69043 MA0148.3
FOXA1 MCF7 Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 MCF7 dex Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 MCF7 e2 Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 T47D Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 T47D dex Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 T47D e2 Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 ZR751 Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 ZR751 dex Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 ZR751 e2 Permissive Homo sapiens GSE72249 MA0148.3
FOXA1 MCF7 Permissive Homo sapiens GSE80808 MA0148.3
FOXA1 LNCAP dht Permissive Homo sapiens GSE83860 MA0148.3
FOXA1 LNCAP dht tnfa Permissive Homo sapiens GSE83860 MA0148.3
FOXA1 LNCAP dmso Permissive Homo sapiens GSE83860 MA0148.3
FOXA1 LNCAP tnfa Permissive Homo sapiens GSE83860 MA0148.3